Index

B

bed2bigbed() (mg_process_files.tool.bed_indexer.bedIndexerTool method) bed2hdf5() (mg_process_files.tool.bed_indexer.bedIndexerTool method)

bed_feature_length() (mg_process_files.tool.bed_indexer.bedIndexerTool method) bedIndexerTool (class in mg_process_files.tool.bed_indexer)

G

gff32hdf5() (mg_process_files.tool.gff3_indexer.gff3IndexerTool method)

gff32tabix() (mg_process_files.tool.gff3_indexer.gff3IndexerTool method) gff3IndexerTool (class in mg_process_files.tool.gff3_indexer)

J

json2hdf5() (mg_process_files.tool.json_3d_indexer.json3dIndexerTool method)

json3dIndexerTool (class in mg_process_files.tool.json_3d_indexer)

M

mg_process_files.tool (module)

P

process_bed (class in process_bed) (module) process_gff3 (module)

process_json_3d (class in process_json_3d) (module) process_wig (class in process_wig), [1] (module)

R

run() (mg_process_files.tool.bed_indexer.bedIndexerTool method) (mg_process_files.tool.gff3_indexer.gff3IndexerTool method) (mg_process_files.tool.json_3d_indexer.json3dIndexerTool method) (mg_process_files.tool.wig_indexer.wigIndexerTool method) (process_bed.process_bed method) (process_json_3d.process_json_3d method) (process_wig.process_wig method), [1]

U

unzipJSON() (mg_process_files.tool.json_3d_indexer.json3dIndexerTool method)

W

wig2bigwig() (mg_process_files.tool.wig_indexer.wigIndexerTool method)

wig2hdf5() (mg_process_files.tool.wig_indexer.wigIndexerTool method) wigIndexerTool (class in mg_process_files.tool.wig_indexer)