Requirements and Installation¶
Requirements¶
Software¶
- Mongo DB 3.2
- Python 2.7.10+
- SamTools
- bedToBigBed - http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
- wigToBigWig - http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
- HDF5
Python Modules¶
- numpy
- h5py
- pyBigWig
- pysam
Installation¶
Directly from GitHub:
1 | git clone https://github.com/Multiscale-Genomics/mg-process-files.git
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Using pip:
1 | pip install git+https://github.com/Multiscale-Genomics/mg-process-files.git
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